https://valenlab.r-universe.devRecent package updates in valenlabR-universehttps://github.com/valenlab.pnghttps://valenlab.r-universe.devSat, 25 Jul 2026 19:18:47 GMTeivind.valen@gmail.com (Eivind Valen)`amplican` performs alignment of the amplicon reads, normalizes gathered data, calculates multiple statistics (e.g. cut rates, frameshifts) and presents results in form of aggregated reports. Data and statistics can be broken down by experiments, barcodes, user defined groups, guides and amplicons allowing for quick identification of potential problems.https://github.com/r-universe/bioc/actions/runs/36555129451Sat, 25 Jul 2026 19:18:47 GMTamplican1.35.5successhttps://bioc.r-universe.devhttps://github.com/bioc/amplicanamplicanFAQ.RmdamplicanFAQ.htmlampliCan FAQ2018-09-14 19:37:242023-05-02 20:08:33amplicanOverview.RmdamplicanOverview.htmlampliCan Overview2016-08-23 13:15:452026-03-31 14:50:50codeExplained.RmdcodeExplained.htmlampliCan Code Explained2026-06-13 19:09:442026-06-13 19:09:44configPreparationWithAI.RmdconfigPreparationWithAI.htmlPreparing amplican config from Excel with LLM assistance2026-06-13 19:09:442026-06-13 19:09:44example_amplicon_report.Rmdexample_amplicon_report.htmlReport breakdown by amplicon sequence2017-06-02 09:34:182026-04-26 10:03:06example_barcode_report.Rmdexample_barcode_report.htmlReport breakdown by barcode2017-06-02 09:34:182026-04-01 17:38:03example_group_report.Rmdexample_group_report.htmlReport breakdown by group2017-06-02 09:34:182026-04-01 17:38:03example_guide_report.Rmdexample_guide_report.htmlReport breakdown by guideRNA2017-06-02 09:34:182026-04-01 17:38:03example_id_report.Rmdexample_id_report.htmlReport breakdown by ID2017-06-02 09:34:182026-04-26 10:03:06example_index.Rmdexample_index.htmlSummary Read Report2017-04-20 13:23:122025-11-11 15:10:45amplicanOutputTweaking.RmdamplicanOutputTweaking.htmlTweaking amplican output2026-06-13 19:09:442026-06-13 19:09:44